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Conference Paper
Fujimura RK, Goodkin K, Petito C, Shapshak P. HIV RNA and DNA load in neuroAIDS brain. In: 6th Poster Session of the Department of Psychiatry and Behavioral Sciences. 6th Poster Session of the Department of Psychiatry and Behavioral Sciences. University of Miami School of Medicine; 2000.
Shapshak P. Invited Chair. In: International Symposium on Bioinformatics & Cybernetics. International Symposium on Bioinformatics & Cybernetics. Orlando, FL; 2002.
Fujimura RK, Khamis I, Shapshak P, Goodkin K. A Method for Regional Comparison of the Ratio of Regulatory mRNA to Structural RNA of HIV-1 in Infected Human Brain. In: American Society of Biochemistry and Molecular Biology. American Society of Biochemistry and Molecular Biology. Orlando, FL; 2001.
Minagar A, Shapshak P, Heyes M, Sheramata WA, Fujimura RK, Ownby RL, Goodkin K, Eisdorfer C. Microglia and astrocytes in NeuroAIDS, Alzheimer’s Disease, and Multiple Sclerosis. In: Miami Symposium in Biotechnology. Miami Symposium in Biotechnology. Miami Beach, FL; 2001.
Shapshak P, Duncan R, Nath A, Turchen J, Minagar A, Davis W, Seth R, Kazic T. Neuron model for cocaine abuse and HIV infection of brain (NeuroAIDS): gene expression in cultured human neurons exposed to cocaine and HIV-1 proteins gp120 and tat. In: The Third Symposium on the Functional Genomics of Critical Illness and Injury. The Third Symposium on the Functional Genomics of Critical Illness and Injury. NIH, Bethesda, MD; 2005.
Shapshak P, Duncan R, Minagar A, Goodkin K. The predominant role of IFN- in the neuropathogenesis of HIV-1 infection. In: Neurology. Vol. 56. S3th ed. Neurology. Philadelphia, PA; 2001. p. S63.006.
Torres-Munoz JE, Shapshak P, Polavarapu R, Bowman M, Keegan MG, Petito C. RNA preservation in post-mortem cerebral cortex of AIDS and control brains. In: Journal of NeuroVirology. Vol. 8. S1th ed. Journal of NeuroVirology. ; 2002. p. 23.
Shapshak P, Goodkin K, Minagar A, Fujimura RK, Crandall KA, Fenjves E, Pastori R, McCoy CB, Page JB, Duncan R, et al. Unifying dementia hypothesis: Microglia and astrocytes in neuroAIDS, alzeheimer’s disease, and multiple sclerosis. In: 6th Poster Session of the Department of Psychiatry and Behavioral Sciences. 6th Poster Session of the Department of Psychiatry and Behavioral Sciences. University of Miami School of Medicine; 2000.
Shapshak P, Duncan R, Minagar A, Goodkin K, Duran EM, Nath A, Turchan-Cholewo J, Davis W, Seth R, Kazic T. The use of bioinformatics for gene expression studies in NeuroAIDS. In: NIH 10th Annual Human Brain Project Conference. NIH 10th Annual Human Brain Project Conference. Bethesda, MD; 2004.
Shapshak P, Goodkin K, Kazic T, Solveig AM, Shapshak P, Nath A. Use of differing microarray and bioinformatics technologies for gene expression in human neurons in culture and brain. In: 2005 NIDA International Forum: linking drug abuse and HIV/AIDS Research. 2005 NIDA International Forum: linking drug abuse and HIV/AIDS Research. Orlando, FL; 2005.
Shapshak P, Goodkin K, Kazic T, Solveig AM, Shapshak P, Nath A. Use of differing microarray and bioinformatics technologies for gene expression in human neurons in culture and brain. In: 2005 NIDA International Forum: linking drug abuse and HIV/AIDS Research. 2005 NIDA International Forum: linking drug abuse and HIV/AIDS Research. Orlando, FL; 2005.
Journal Article
Shapshak P, Rodriguez HE, Kayathri R, Levine AJ, Chiappelli F, Minagar A. Alzheimer's disease and HIV associated dementia related genes: I. location and function. Bioinformation [Internet]. 2008 ;2:348-57. Available from: http://www.ncbi.nlm.nih.gov/pubmed?term=18685724
Shapshak P, Duncan R, Torres-Munoz JE, Duran EM, Minagar A, Petito C. Analytic approaches to differential gene expression in AIDS versus control brains. Frontiers in Bioscience: A Journal and Virtual Library [Internet]. 2004 ;9:2935-46. Available from: http://www.ncbi.nlm.nih.gov/pubmed/15353327
Shapshak P, Duncan R, Turchan-Cholewo J, Nath A, Minagar A, Kangueane P, Davis W, Chiappelli F, Elkomy FF, Seth R, et al. Bioinformatics models in drug abuse and Neuro-AIDS: Using and developing databases. Bioinformation [Internet]. 2006 ;1(3):86-8. Available from: http://www.ncbi.nlm.nih.gov/pubmed/17597862
Shapshak P. Bioinformation and molecule of the month: Multiple interactive pathways for a single gene, NFkB. Bioinformation. 2012 ;8(9):399-402.
Shapshak P. Bioinformation editorial erratum. Bioinformation. 2013 ;9(3):168.
Shapshak P, Stewart RV, Rodriguez de la Vega P, Dominguez B, Fujimura RK, Segal DM, Sun NC, Delgado S, Petito C. Brain macrophage surface marker expression with HIV-1 infection and drug abuse: a preliminary study. Journal of NeuroAIDS [Internet]. 2002 ;2(3):37-50. Available from: http://www.ncbi.nlm.nih.gov/pubmed/16873198
Levine AJ, Singer EJ, Sinsheimer JS, Hinkin CH, Papp J, Dandekar S, Giovanelli A, Shapshak P. CCL3 genotype and current depression increase risk of HIV-associated dementia. Neurobehavioral HIV Medicine [Internet]. 2009 ;1:1-7. Available from: http://www.ncbi.nlm.nih.gov/pubmed/20725607
Chiappelli F, Shapshak P, Younai F, McCoy CB, Page JB, Prolo P. Cellular immunology in HIV-1 positive African American women using alcohol and cocaine. Frontiers in Bioscience: A Journal and Virtual Library [Internet]. 2006 ;11:2434-41. Available from: http://www.ncbi.nlm.nih.gov/pubmed/16720325
Goodkin K, Vitiello B, Lyman WD, Asthana D, Atkinson JH, Heseltine PNR, Molina R, Zheng W, Khamis I, Wilkie FL, et al. Cerebrospinal and peripheral human immunodeficiency virus type 1 load in a multisite, randomized, double-blind, placebo-controlled trial of D-Ala1-peptide T-amide for HIV-1-associated cognitive-motor impairment. Journal of NeuroVirology [Internet]. 2006 ;12(3):178-89. Available from: http://www.ncbi.nlm.nih.gov/pubmed/16877299
Zarate S, Pond SLK, Shapshak P, Frost SD. Comparative study of methods for detecting sequence compartmentalization in human immunodeficiency virus type 1. Journal of Virology [Internet]. 2007 ;81:6643-51. Available from: http://www.ncbi.nlm.nih.gov/pubmed/17428864
Sakharkar MK, Chow VTK, Ghosh K, Chaturvedi I, Lee PC, Bagavathi SP, Shapshak P, Subbiah S, Kangueane P. Computational prediction of SEG (single exon gene) function in humans. Frontiers in Bioscience: A Journal and Virtual Library [Internet]. 2005 ;10:1382-95. Available from: http://www.ncbi.nlm.nih.gov/pubmed/15769633
Duncan R, Shapshak P, Page JB, Chiappelli F, McCoy CB, Messiah SE. Crack cocaine: effect modifier of RNA viral load and CD4 count in HIV infected African American women. Frontiers in Bioscience: A Journal and Virtual Library [Internet]. 2007 ;12:1488-95. Available from: http://www.ncbi.nlm.nih.gov/pubmed/17127396
Shapshak P, Fujimura RK, Srivastava A, Goodkin K. Dementia and the Neurovirulence of HIV-1. CNS Spectrums [Internet]. 2000 ;5(4):31-42. Available from: http://www.ncbi.nlm.nih.gov/pubmed?term=Dementia%20and%20the%20Neurovirulence%20of%20HIV-1%2C%20CNS%20Spectrums
Page JB, Shapshak P, Duran EM, Even G, Moleon-Borodowski I, Llanusa-Cestero R. Detection of HIV-1 in injection paraphernalia: risk in an era of heightened awareness. AIDS Patient Care and STDs [Internet]. 2006 ;20(8):576-85. Available from: http://www.ncbi.nlm.nih.gov/pubmed/16893327

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