Quality Control - Frontal Cortex

QUALITY CHECK OF FRONTAL CORTEX SAMPLES (#25 - #48)

Please see explanation page for more information on quality values:

  • SF = Scaling Factor (less than 10 desired)
  • BG Avg = Background average (less than 100 desired)
  • % present = Percent probes present (consistent values desired)
  • GAPDH/M33197 = 3'/5' ratio (less than 3 desired)
#25 - #48
FRONTAL CORTEX
Date
SF
BG Avg
% Present
HS-AFFX- HUMGAPDH/ M33197-SIG35
FC-A1-25
02/14/07 - 12:25 PM
2.619
72.48
45.44
1.04
FC-A2-26
02/14/07 - 12:13 PM
3.741
76.77
39.15
1.26
FC-A3-27
02/14/07 - 11:17 AM
2.21
68.94
45.45
0.99
FC-A4-28
02/14/07 - 11:28 AM
2.605
79.2
43.36
1.11
FC-A5-29
02/14/07 - 11:51 AM
2.679
150.27
33.44
1.35
FC-A6-30
02/14/07 - 11:40 AM
2.626
65.11
44.35
1.24
FC-B1-31
02/14/07 - 12:36 PM
2.676
69.64
43
0.96
FC-B2-32
02/14/07 - 12:02 PM
2.846
65.43
44.18
1
FC-B3-33
02/14/07 - 03:03 PM
2.164
99.13
45.38
1.11
FC-B4-34
02/14/07 - 02:52 PM
2.323
66.14
50.17
1.16
FC-B5-35 †¶
02/14/07 - 02:41 PM
9.385
65.7
25.03
2.41
FC-B6-36 †¶
02/14/07 - 02:30 PM
10.593
72.84
23.45
2.55
FC-C1-37
02/14/07 - 02:19 PM
2.045
77.58
46.18
0.98
FC-C2-38
02/14/07 - 02:07 PM
3.495
80.25
36.39
1.27
FC-C3-39
02/14/07 - 01:56 PM
1.638
116.08
43.99
1.09
FC-C4-40
02/14/07 - 01:45 PM
1.327
91.07
48.66
0.94
FC-C5-41
02/16/07 - 11:29 AM
2.676
68.23
44.92
1.39
FC-C6-42
02/16/07 - 11:40 AM
3.792
84.98
37.19
2.58
FC-C7-43
03/06/07 - 12:41 PM
2.125
82.82
44.6
1.2
FC-D1-44
03/06/07 - 12:30 PM
2.782
63.48
45.94
1.24
FC-D2-45
03/06/07 - 12:19 PM
4.578
70.27
35.79
1.81
FC-D3-46
03/06/07 - 12:07 PM
6.389
66.97
33.91
2.62
FC-D4-47
03/06/07 - 11:23 AM
2.266
80.92
46.56
1.13
FC-D5-48
03/06/07 - 11:34 AM
5.329
72.38
35.49
1.7

Potential anomalous values are bolded

** Designates that the RNA gels show evidence of degradation

¶ Designates that the sample has multiple anomalies that, in aggregate, suggest that RNA degradation could have had an influence on the hybridization results on this particular chip. This influence would not necessarily affect all of the probe sets.