Quality Control - Basal Ganglia

QUALITY CHECK OF BASAL GANGLIA SAMPLES (#49 - #72)

Please see explanation page for more information on quality values:

  • SF = Scaling Factor (less than 10 desired)
  • BG Avg = Background average (less than 100 desired)
  • % present = Percent probes present (consistent values desired)
  • GAPDH/M33197 = 3'/5' ratio (less than 3 desired)
#49 - #72
BASAL GANGLIA
Date
SF
BG Avg
% Present
HS-AFFX- HUMGAPDH/ M33197-SIG35
BG-A1-49
02/21/07 - 11:51 AM
4.16
111.15
34.84
1.58
BG-A2-50
02/21/07 - 12:14 PM
3.793
117.53
34.21
1.19
BG-A3-51
02/21/07 - 12:25 PM
2.568
93.77
43.73
1.03
BG-A4-52
02/21/07 - 12:03 PM
4.118
128.28
31.18
1.64
BG-A5-53
02/21/07 - 11:40 AM
2.708
133.37
34.78
1.18
BG-A6-54
02/21/07 - 11:29 AM
3.74
103.42
36.73
1.47
BG-B1-55
02/21/07 - 11:18 AM
2.117
141.85
38.94
1.14
BG-B2-56
02/22/07 - 12:42 PM
2.353
95.77
42.11
1.03
BG-B3-57
02/22/07 - 12:21 PM
2.741
106.61
41.22
1.3
BG-B4-58
02/22/07 - 11:48 AM
3.362
84.89
41.47
1.3
BG-B5-59 †¶
02/22/07 - 11:36 AM
10.565
91.94
19.75
5.23
BG-B6-60 †¶
02/22/07 - 11:02 AM
10.486
98.18
20.74
4.34
BG-C1-61
02/22/07 - 12:10 PM
1.889
100.04
46.98
1.04
BG-C2-62
02/22/07 - 11:58 AM
3.807
82.08
39.87
1.42
BG-C3-63
02/22/07 - 12:53 PM
3.145
93.94
41.99
1.1
BG-C4-64
02/22/07 - 11:25 AM
1.072
301.93
44.86
1.02
BG-C5-65 †¶
02/22/07 - 01:05 PM
8.419
80.58
25.24
4.69
BG-C6-66
02/22/07 - 12:25 PM
3.555
91.13
40.96
2.47
BG-C7-67
03/06/07 - 12:55 PM
2.604
93.19
44.4
1.18
BG-D1-68
03/06/07 - 01:06 PM
2.77
90.17
42.43
1.11
BG-D2-69
03/06/07 - 01:17 PM
3.68
103.56
40.29
2.05
BG-D3-70
03/06/07 - 01:28 PM
4.292
82.42
41.42
1.68
BG-D4-71
03/06/07 - 11:45 AM
3.664
102.41
40.49
1.87
BG-D5-72
03/06/07 - 11:57 AM
3.709
96.02
42.28
1.5

Potential anomalous values are bolded

** Designates that the RNA gels show evidence of degradation

¶ Designates that the sample has multiple anomalies that, in aggregate, suggest that RNA degradation could have had an influence on the hybridization results on this particular chip. This influence would not necessarily affect all of the probe sets.