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A
Shapshak P, Rodriguez HE, Kayathri R, Levine AJ, Chiappelli F, Minagar A. Alzheimer's disease and HIV associated dementia related genes: I. location and function. Bioinformation [Internet]. 2008 ;2:348-57. Available from: http://www.ncbi.nlm.nih.gov/pubmed?term=18685724
Shapshak P, Duncan R, Torres-Munoz JE, Duran EM, Minagar A, Petito C. Analytic approaches to differential gene expression in AIDS versus control brains. Frontiers in Bioscience: A Journal and Virtual Library [Internet]. 2004 ;9:2935-46. Available from: http://www.ncbi.nlm.nih.gov/pubmed/15353327
B
Shapshak P. Bioinformatics in Neurodegenerative Disease. 2003 .
Shapshak P, Duncan R, Turchan-Cholewo J, Nath A, Minagar A, Kangueane P, Davis W, Chiappelli F, Elkomy FF, Seth R, et al. Bioinformatics models in drug abuse and Neuro-AIDS: Using and developing databases. Bioinformation [Internet]. 2006 ;1(3):86-8. Available from: http://www.ncbi.nlm.nih.gov/pubmed/17597862
Shapshak P. Bioinformation and molecule of the month: Multiple interactive pathways for a single gene, NFkB. Bioinformation. 2012 ;8(9):399-402.
Shapshak P. Bioinformation editorial erratum. Bioinformation. 2013 ;9(3):168.
Shapshak P, Minagar A, Kangueane P, Frost SD, Kosakovsky Pond SL, Zarate S, Singer EJ, Commins D, De Groot A, Quinones-Mateu M, et al. Blood and brain HIV strain variation. In: Goodkin K, Shapshak P The Spectrum of NeuroAIDS Disorders: Pathophysiology, Diagnosis, and Treatment. The Spectrum of NeuroAIDS Disorders: Pathophysiology, Diagnosis, and Treatment. ASM Press; 2008.
Shapshak P, Minagar A, Kangueane P, Frost SD, Kosakovsky Pond SL, Zarate S, Singer EJ, Commins D, De Groot A, Quinones-Mateu M, et al. Blood and brain HIV strain variation. In: Goodkin K, Shapshak P The Spectrum of NeuroAIDS Disorders: Pathophysiology, Diagnosis, and Treatment. The Spectrum of NeuroAIDS Disorders: Pathophysiology, Diagnosis, and Treatment. ASM Press; 2008.
Shapshak P. Brain gene expression. In: International Symposium on Bioinfomatics & Cybermatics. International Symposium on Bioinfomatics & Cybermatics. Orlando, FL; 2004.
Shapshak P. Brain gene expression studies in dementia: Drug abuse, HIV, and amyloid. In: 3rd International Differential Gene Expression Symposium. 3rd International Differential Gene Expression Symposium. Vanderbilt University School of Medicine; 2002.
Shapshak P, Stewart RV, Rodriguez de la Vega P, Dominguez B, Fujimura RK, Segal DM, Sun NC, Delgado S, Petito C. Brain macrophage surface marker expression with HIV-1 infection and drug abuse: a preliminary study. Journal of NeuroAIDS [Internet]. 2002 ;2(3):37-50. Available from: http://www.ncbi.nlm.nih.gov/pubmed/16873198
C
Levine AJ, Singer EJ, Sinsheimer JS, Hinkin CH, Papp J, Dandekar S, Giovanelli A, Shapshak P. CCL3 genotype and current depression increase risk of HIV-associated dementia. Neurobehavioral HIV Medicine [Internet]. 2009 ;1:1-7. Available from: http://www.ncbi.nlm.nih.gov/pubmed/20725607
Chiappelli F, Shapshak P, Younai F, McCoy CB, Page JB, Prolo P. Cellular immunology in HIV-1 positive African American women using alcohol and cocaine. Frontiers in Bioscience: A Journal and Virtual Library [Internet]. 2006 ;11:2434-41. Available from: http://www.ncbi.nlm.nih.gov/pubmed/16720325
Goodkin K, Vitiello B, Lyman WD, Asthana D, Atkinson JH, Heseltine PNR, Molina R, Zheng W, Khamis I, Wilkie FL, et al. Cerebrospinal and peripheral human immunodeficiency virus type 1 load in a multisite, randomized, double-blind, placebo-controlled trial of D-Ala1-peptide T-amide for HIV-1-associated cognitive-motor impairment. Journal of NeuroVirology [Internet]. 2006 ;12(3):178-89. Available from: http://www.ncbi.nlm.nih.gov/pubmed/16877299
Zarate S, Pond SLK, Shapshak P, Frost SD. Comparative study of methods for detecting sequence compartmentalization in human immunodeficiency virus type 1. Journal of Virology [Internet]. 2007 ;81:6643-51. Available from: http://www.ncbi.nlm.nih.gov/pubmed/17428864
Sakharkar MK, Chow VTK, Ghosh K, Chaturvedi I, Lee PC, Bagavathi SP, Shapshak P, Subbiah S, Kangueane P. Computational prediction of SEG (single exon gene) function in humans. Frontiers in Bioscience: A Journal and Virtual Library [Internet]. 2005 ;10:1382-95. Available from: http://www.ncbi.nlm.nih.gov/pubmed/15769633
Levine AJ, Singer EJ, Bilder R, Shapshak P, Sinsheimer JS. COMT val168met polymorphism confers risk for working memory impairment in HIV. In: Third Meeting on HIV Infection and the Central Nervous System. Third Meeting on HIV Infection and the Central Nervous System. Stresa, Italy; 2009.
Duncan R, Shapshak P, Page JB, Chiappelli F, McCoy CB, Messiah SE. Crack cocaine: effect modifier of RNA viral load and CD4 count in HIV infected African American women. Frontiers in Bioscience: A Journal and Virtual Library [Internet]. 2007 ;12:1488-95. Available from: http://www.ncbi.nlm.nih.gov/pubmed/17127396
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Shapshak P, Fujimura RK, Srivastava A, Goodkin K. Dementia and the Neurovirulence of HIV-1. CNS Spectrums [Internet]. 2000 ;5(4):31-42. Available from: http://www.ncbi.nlm.nih.gov/pubmed?term=Dementia%20and%20the%20Neurovirulence%20of%20HIV-1%2C%20CNS%20Spectrums
Pandjassarame K, Sakharkar MK, Chiappelli F, Shapshak P. Designing HIV peptide vaccines: Rhetoric or reality for NeuroAIDS. In: Goodkin K, Shapshak P The Spectrum of NeuroAIDS Disorders: Pathophysiology, Diagnosis, and Treatment. The Spectrum of NeuroAIDS Disorders: Pathophysiology, Diagnosis, and Treatment. ASM Press; 2008. pp. 105-119.
Pandjassarame K, Sakharkar MK, Chiappelli F, Shapshak P. Designing HIV peptide vaccines: Rhetoric or reality for NeuroAIDS. In: Goodkin K, Shapshak P The Spectrum of NeuroAIDS Disorders: Pathophysiology, Diagnosis, and Treatment. The Spectrum of NeuroAIDS Disorders: Pathophysiology, Diagnosis, and Treatment. ASM Press; 2008. pp. 105-119.
Page JB, Shapshak P, Duran EM, Even G, Moleon-Borodowski I, Llanusa-Cestero R. Detection of HIV-1 in injection paraphernalia: risk in an era of heightened awareness. AIDS Patient Care and STDs [Internet]. 2006 ;20(8):576-85. Available from: http://www.ncbi.nlm.nih.gov/pubmed/16893327
Shapshak P, Stengel R. Discovering brain mechanisms and the rules of molecular biology. In: 6th World Multiconference on Systemics, Cybernetics and Informatics. 6th World Multiconference on Systemics, Cybernetics and Informatics. Orlando, FL; 2002.
Shapshak P, Duncan R, Kuljis RO, Minagar A, Alcabes P, Fujimura RK, Stewart RV, Rodriguez de la Vega P, Goodkin K, Petito C. Drug Abuse and AIDS Brain: Unexpected expression of neuronal Nitric Oxide Synthase, Interferon Gamma, TNF-alpha, and Il-4. In: College of Problems in Drug Dependence. College of Problems in Drug Dependence. Scottsdale, AZ; 2001.
E
Shapshak P, Kangueane P, Fujimura RK, Commins D, Chiappelli, F; SE, Levine AJ, Minagar A, Novembre FJ, Somboonwit C, Nath A, et al. Editorial NeuroAIDS Review. AIDS [Internet]. 2011 ;25:123-41. Available from: http://www.ncbi.nlm.nih.gov/pubmed/21076277

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